Welcome to GenIE-Sys’s documentation!

Administrator Documentation

• Getting Started
  • Overview of GenIE-Sys
  • Requirements
• Installation & Updates
  • Download the GenIE-Sys
  • Folder structure
  • Install with Docker
  • Install with MAMP/XAMPP
  • Configuration file
  • Troubleshooting
    • Running from Command Line
    • Subfolder permissions
    • Broken subpages
    • Example input files
    • Updates
    • More problems?

• Administration
  • Plugin architecture
  • Database design
    • Creating a new database using GUI
    • Creating a new database using CMD
  • Load novel genome
    • Download
    • Parse genome
    • Create a database
    • Loading primary tables
    • Loading secondary tables
  • GeneList
  • BLAST
  • Gene Information Pages
  • JBrowse
  • How to create a plugin?
  • Change Theme
• Who Uses GenIE-Sys

User Documentation

• Basic Usage
  • GeneList
  • Gene Information Page
  • BLAST
  • GBrowse
  • exImage
  • Sequence search

Indices and tables

• Index
• Search Page